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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
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Posts
academia
Post 2: Doing networks of scientific papers
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Post 10: And … who pays for science 😶
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Post 11: Predatory publishers and journals 🦈
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ai
Post 2: Dall-E 🎨
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Post 3: The movement 37 of AlphaGo 🧐
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Post 4: My experience using Dall-E 👨🎨
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Post 5: GitHub copilot and UNAM 💻
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Post 7: ChatGPT 🤯
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Post 8: AI models are getting larger 💸
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Post 9: An Open source ChatGPT 🔥
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Post 11: BARD, Google’s ChatGPT 🤖
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Post 12: Pi, a new ChatBot 🥧
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Post 15: My experience using DALL-E 3 👨🎨
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Post 16: The Demons Behind AI ⚠️
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Post 17: FlowGPT vs Bad Bunny 🤖
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Post 24: Pigeons are not real ⚠️
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bioinformatics
Post 5: Mapping GitHub Repositories 💻
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Post 8: The many faces of Python 🐍
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cv
microbiome
Post 1: A new tree of life 🌳
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Post 2: Mom… I’m an archaeon! 🦠
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Post 3: A taxogenomic database 💻
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Post 5: The human microbiome 👫
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Post 6: Thousands of new microbes 🌎
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Post 9: A new Asgardian archaea! 🎉
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Post 10: We are Asgardians ⚒️
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Post 11: Massive Microbial Phylogenies 🧬
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Post 14: An Update to the Tree of Life🌳
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other
Post 1: The genomics behind dog breeds 🐶
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Post 2: The evolution of words❤️
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Post 3: An upside down polymerase-world 🧬
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Post 5: Evolutionary parallelisms🪞
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Post 9: A funny case of academic protest 💩
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Post 13: Doing science is very expensive 💸
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Post 14: Ig Nobel 2024 🏆
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portfolio
Portfolio item number 1
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Short description of portfolio item number 1
Portfolio item number 2
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Short description of portfolio item number 2
proteins
Post 1: A protein theater 🎭
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Post 2: Ribosomas are liek onions 🧅
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Post 4: How to think about proteins? 🤔
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Post 5: Protein jelly 🍬
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Post 6: Protein language models 💻
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Post 9: The sequence space 🚀
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Post 11: Life lessons from proteins 📖
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Post 12: A beautiful protein structure ❤️
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Post 13: A very strange protein structure ⚠️
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Post 16: Good vibes 🍀
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Post 19: Protien function evolution 🧬
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Post 20: Folding songs 🎵
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Post 22: The largest and smallest proteins 📏
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Post 23: One year after AlphaFold2 📅
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Post 25: The scales of proteins ⏳
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Post 27: A protein emoji 😢
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Post 28: The protein folding 🔥
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Post 29: What you can do with proteins? 🤔
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Post 33: AlphaFold2, the most famous paper 🎉
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Post 35: In memoriam of Dan Tawfik (RIP)
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Post 36: How were proteins drawn before? ✏️
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Post 38: Protein evolution 🧬
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Post 40: Old protein Models 🎨
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Post 44: How old is antibiotic resistance? 💊
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Post 45: The ribosome is a ribozyme! 😱
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Post 47: inktober, art with proteins 🎨
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Post 48: The structures are conserved 💪
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Post 50: AlphaFold3, I’m happy 🥳 and angry 😡
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Post 52: The evolution of AlphaFold 🕦
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Post 53: Awards won by AlphaFold 🏆
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Post 54: How a protein shapes culture 🍣
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Post 55: The Krebs cycle 🔄
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Post 58: Some proteins are very strange 🧐
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publications
Paper Title Number 1
Published in Journal 1, 2009
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1). http://academicpages.github.io/files/paper1.pdf
Paper Title Number 2
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2). http://academicpages.github.io/files/paper2.pdf
Paper Title Number 3
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3). http://academicpages.github.io/files/paper3.pdf
talks
teaching
Analysis and reconstruction of Metagenome-Assembled Genomes
seminar, YouTube, 2021
In this seminar I had the opportunity to collaborate with WinterGenomics to talk about metagenomics.
From biologist to biologist (v6.0)
PDF, CDMX, 2022
I created this series of tips to facilitate learning for new students in the biology program at the Faculty of Sciences (UNAM), although i think that they can be generalized to other fields.
Protein science based on artificial intelligence
reposiroty, GitHub, 2023
This repository contains a series of YouTube videos to introduce to AI based protein science to spanish speakers.
Introduction to microbial genomics and taxogenomics
seminar, ICML/UNAM, 2023
In this seminar, I was invited to talk about taxogenomics and metagenomics.